Miyakogusa Predicted Gene
- Lj5g3v2193910.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SUA7_LOTJA |
541 |
95.1 |
95.1 |
(tr|I3SUA7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G17720.1 |
354 |
67.3 |
81.1 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313 |
| Medicago |
Medtr8g066460.1 |
462 |
80.8 |
88.5 |
| RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr8:27633972-27639318 | 20130731 |
| Soybean |
Glyma01g01950.1 |
452 |
79.0 |
87.4 |
|
| LJGI |
gnl|LJGI|TC59868 |
1400 |
100.0 |
100.0 |
similar to UniRef100_A7PBA3 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2193910.1 |
length: 286 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
1.8e-08 |
7-66 |
| HMMSmart |
SM00360 |
RNA |
3.2e-07 |
5-74 |
| ProfileScan |
PS50102 |
RRM |
10.633 |
4-76 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
4.8e-08 |
4-72 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
159-172 |
| superfamily |
SSF54928 |
RNA-binding |
3.3e-11 |
4-109 |
- Wolf-PSORT
Lj5g3v2193910.1 cyto 4.5, cyto_nucl 3.83333, chlo 3, nucl_plas 2.16667, nucl 2, chlo_mito 2, E.R._plas 1.33333
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2193910.1 |
|