Miyakogusa Predicted Gene

Lj5g3v2179600.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LLP5_SOYBN 415 62.6 71.6 (tr|K7LLP5) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
TAIR_pep AT1G68200.1 237 47.6 60.5 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:25562118-25563948 FORWARD LENGTH=308
Medicago Medtr1g109320.1 465 68.0 74.8 | zinc finger CCCH domain protein | HC | chr1:49436307-49432456 | 20130731
Soybean Glyma10g41530.1 367 64.0 71.7  
LJGI gnl|LJGI|DC596794 676 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2179600.1 length: 357 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 9e-11 269-306
307-340
HMMPfam PF00642 zf-CCCH 8.5e-13 274-299
HMMSmart SM00356 zinc 0.00045 273-300
311-338
ProfileScan PS50103 ZF_C3H1 12.859 273-301
311-339
no_ID  
Coil coil coiled-coil NA 80-111
HMMPanther PTHR12547 CCCH 5.8e-68 164-348
HMMPanther PTHR12547:SF17 OOCYTE 5.8e-68 164-348
Seg seg seg NA 122-133
164-172
superfamily SSF90229 CCCH 2.6e-09 271-306
306-345
Wolf-PSORT
Lj5g3v2179600.1	nucl 7, chlo 4, pero 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2179600.1