Miyakogusa Predicted Gene

Lj5g3v2169560.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NFR4_SOYBN 1800 81.1 86.5 (tr|I1NFR4) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=2
TAIR_pep AT2G01130.1 1497 65.9 78.1 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:88847-94635 REVERSE LENGTH=1113
Medicago Medtr1g109170.2 1811 78.9 85.8 | ATP-dependent RNA helicase DHX36-like protein | HC | chr1:49342716-49360401 | 20130731
Soybean Glyma20g25800.1 1732 80.6 85.7  
LJGI gnl|LJGI|FS318755 1610 100.0 100.0 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2169560.1 length: 1154 aa.
IPR001159 Double-stranded RNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003725 double-stranded RNA binding    
HMMPfam PF00035 dsrm 1.4e-08 1091-1150
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 5.4e-12 599-683
HMMSmart SM00490 helicase 4.5e-15 578-684
ProfileScan PS51194 HELICASE_CTER 16.629 550-724
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 1.2e-23 746-836
HMMSmart SM00847 Helicase 3.7e-33 746-836
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 7.3e-09 292-446
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 2.9e-12 874-983
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 3.5e-30 283-472
ProfileScan PS51192 HELICASE_ATP_BIND_1 22.531 296-463
IPR014720 Double-stranded RNA-binding-like domain
Gene3D G3DSA:3.30.160.20 no description 1e-08 1089-1150
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.2e-75 295-844
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.5e-11 286-447
553-693
HMMPanther PTHR18934 ATP-DEPENDENT 0 105-1141
HMMPanther PTHR18934:SF68 SUBFAMILY 0 105-1141
Seg seg seg NA 174-188
217-231
422-431
673-682
1138-1149
superfamily SSF54768 dsRNA-binding 1.9e-09 997-1153
Wolf-PSORT
Lj5g3v2169560.1	plas 6.5, golg_plas 4.5, vacu 2, E.R. 2, E.R._vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2169560.1