Miyakogusa Predicted Gene

Lj5g3v2169550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MP51_SOYBN 800 92.0 96.4 (tr|I1MP51) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G52820.1 681 77.7 89.4 | Symbols: | WD-40 repeat family protein / notchless protein, putative | chr5:21401423-21404203 FORWARD LENGTH=473
Medicago Medtr1g054300.1 765 88.9 94.3 | WD-40 repeat protein/notchless protein, putative | HC | chr1:23359694-23368343 | 20130731
Soybean Glyma16g27980.1 800 92.0 96.4  
LJGI gnl|LJGI|TC72027 1806 99.6 99.6 similar to UniRef100_A7Q245 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (62%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2169550.1 length: 411 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.4e-10 107-144
149-186
197-234
239-275
279-353
360-396
HMMSmart SM00320 WD40 5e-09 105-144
147-186
190-234
237-275
278-353
357-396
ProfileScan PS50082 WD_REPEATS_2 15.254 112-153
154-195
197-235
244-284
364-405
IPR012972 NLE
HMMPfam PF08154 NLE 1.3e-16 19-79
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3e-79 336-410
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 53.600 112-411
superfamily SSF50978 WD40 1.1e-71 65-396
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 131-145
262-276
383-397
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.2e-06 131-145
262-276
383-397
no_ID  
HMMPanther PTHR19848 WD40 2.3e-212 1-411
HMMPanther PTHR19848:SF0 SUBFAMILY 2.3e-212 1-411
Wolf-PSORT
Lj5g3v2169550.1	nucl 8, cyto 3, cysk 1.5, cyto_pero 1.5, cysk_plas 1.5, cyto_E.R. 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2169550.1