Miyakogusa Predicted Gene
- Lj5g3v2166090.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SJH1_LOTJA |
418 |
59.8 |
72.6 |
(tr|I3SJH1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G06240.1 |
120 |
28.6 |
47.1 |
| Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 |
| Medicago |
Medtr3g103020.1 |
281 |
45.3 |
60.7 |
| galactose oxidase | HC | chr3:47452814-47451137 | 20130731 |
| Soybean |
Glyma07g37650.1 |
286 |
46.1 |
60.8 |
|
| LJGI |
gnl|LJGI|BW605459 |
597 |
100.0 |
100.0 |
weakly similar to UniRef100_A4UV34 Cluster: F-box domain-containing protein; n=2; Solanum|Rep: F-box domain-containing protein - Solanum tuberosum (Potato), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2166090.1 |
length: 368 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
3.9e-08 |
8-44 |
| HMMSmart |
SM00256 |
A |
4.3e-08 |
8-48 |
| ProfileScan |
PS50181 |
FBOX |
10.266 |
2-48 |
| superfamily |
SSF81383 |
F-box |
3.8e-13 |
8-58 |
| IPR006527 |
F-box associated domain, type 1 |
| HMMPfam |
PF07734 |
FBA_1 |
3.1e-06 |
215-297 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
7.8e-27 |
112-301 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
1.6e-09 |
7-44 |
| HMMPanther |
PTHR32133 |
FAMILY |
9.5e-18 |
5-239 |
| HMMPanther |
PTHR32133:SF0 |
SUBFAMILY |
9.5e-18 |
5-239 |
- Wolf-PSORT
Lj5g3v2166090.1 cyto 8.5, cyto_E.R. 5, nucl 2, chlo 1, mito 1, extr 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2166090.1 |
|