Miyakogusa Predicted Gene
- Lj5g3v2152700.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7K1P7_MEDTR |
89.0 |
31.3 |
53.0 |
(tr|G7K1P7) Replication factor A protein OS=Medicago truncatula GN=MTR_5g078250 PE=4 SV=1 |
| TAIR_pep |
AT1G52950.1 |
55.1 |
29.0 |
49.4 |
| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:19725483-19728007 FORWARD LENGTH=566 |
| Medicago |
Medtr5g078250.1 |
89.0 |
31.3 |
53.0 |
| replication factor-A carboxy-terminal domain protein | LC | chr5:33436158-33438920 | 20130731 |
| Soybean |
--No_Hits--
|
|
|
|
|
| LJGI |
gnl|LJGI|TC74725 |
452 |
99.6 |
99.6 |
UniRef100_A9HYM4 Cluster: Thioesterase superfamily protein; n=1; Elusimicrobium minutum Pei191|Rep: Thioesterase superfamily protein - Elusimicrobium minutum Pei191, partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2152700.2 |
length: 210 aa. |
| IPR003871 |
Domain of unknown function DUF223 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF02721 |
DUF223 |
1.5e-07 |
57-122 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
4.3e-06 |
19-117 |
| superfamily |
SSF50249 |
Nucleic |
5.7e-09 |
16-126 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
3-12 |
- Wolf-PSORT
Lj5g3v2152700.2 cyto 4, extr 3, cyto_E.R. 3, chlo 2, E.R. 2, cyto_pero 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2152700.2 |
|