Miyakogusa Predicted Gene

Lj5g3v2133800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NFV4_SOYBN 1130 88.2 94.8 (tr|I1NFV4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G18060.1 922 72.1 84.8 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609
Medicago Medtr1g107560.1 1127 88.9 94.6 | transducin/WD40 repeat protein | HC | chr1:48886013-48890434 | 20130731
Soybean Glyma20g26260.1 1130 88.2 94.8  
LJGI gnl|LJGI|TC59696 299 83.1 83.1 homologue to UniRef100_Q1SN19 Cluster: WD40-like; n=1; Medicago truncatula|Rep: WD40-like - Medicago truncatula (Barrel medic), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2133800.1 length: 610 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0014 50-84
138-174
184-214
230-261
449-476
485-520
534-562
575-605
HMMSmart SM00320 WD40 0.0024 46-85
89-133
134-174
177-216
219-261
268-310
314-354
438-476
481-520
525-563
567-606
ProfileScan PS50082 WD_REPEATS_2 10.275 53-84
184-225
229-262
488-520
531-564
575-610
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.1e-31 26-173
436-464
465-609
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 36.279 53-610
superfamily SSF50978 WD40 1.7e-36 25-354
269-606
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 248-262
no_ID  
HMMPanther PTHR19856 WD-REPEATCONTAINING 3.3e-242 1-607
Wolf-PSORT
Lj5g3v2133800.1	cyto 7, nucl 5, plas 1, cysk 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2133800.1