Miyakogusa Predicted Gene

Lj5g3v2112020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LEG9_SOYBN 1345 81.2 86.9 (tr|I1LEG9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G34280.1 777 51.8 65.2 | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783
Medicago Medtr1g106905.1 1290 78.2 85.3 | transducin/WD-like repeat-protein | HC | chr1:48393181-48400911 | 20130731
Soybean Glyma20g26740.1 1292 78.8 84.2  
LJGI gnl|LJGI|FS342842 1326 100.0 100.0 similar to UniRef100_A7QW75 Cluster: Chromosome chr3 scaffold_199, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_199, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2112020.1 length: 806 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0011 602-636
HMMSmart SM00320 WD40 65 499-541
545-592
595-636
641-679
ProfileScan PS50082 WD_REPEATS_2 10.141 603-638
IPR003603 U2A'/phosphoprotein 32 family A, C-terminal
HMMSmart SM00446 occurring 0.0028 352-370
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.3e-29 469-736
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 13.237 508-688
superfamily SSF50978 WD40 3.5e-31 464-736
no_ID  
Gene3D G3DSA:3.80.10.10 no description 6.4e-08 350-379
HMMPanther PTHR22850 WD40 4.8e-118 314-770
HMMPanther PTHR22850:SF58 ABL096WP 4.8e-118 314-770
Seg seg seg NA 212-227
784-795
superfamily SSF52047 RNI-like 4.3e-09 91-370
Wolf-PSORT
Lj5g3v2112020.1	nucl 10, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2112020.1