Miyakogusa Predicted Gene

Lj5g3v2111990.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NG06_SOYBN 929 80.3 87.9 (tr|I1NG06) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G02860.1 813 71.2 82.7 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:654102-656561 FORWARD LENGTH=819
Medicago Medtr3g053350.1 838 72.1 85.6 | PPR containing plant-like protein | HC | chr3:21211857-21206311 | 20130731
Soybean Glyma20g26760.1 929 80.3 87.9  
LJGI gnl|LJGI|GO035880 1360 100.0 100.0 similar to UniRef100_A7QW79 Cluster: Chromosome chr3 scaffold_199, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_199, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2111990.1 length: 555 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 2.5e-06 16-44
50-80
156-184
190-220
HMMPfam PF12854 PPR_1 4.5e-12 428-461
HMMPfam PF13041 PPR_2 1.9e-11 82-130
257-305
467-516
HMMPfam PF13812 PPR_3 1.2e-08 225-257
HMMTigr TIGR00756 PPR: 1.4e-05 15-48
50-83
85-119
120-154
155-189
190-222
226-258
261-294
402-433
435-461
470-503
ProfileScan PS51375 PPR 8.013 13-47
48-82
83-117
118-152
153-187
188-222
223-257
258-292
293-327
363-397
398-432
433-467
468-502
503-537
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.4e-05 157-240
400-525
no_ID  
HMMPanther PTHR24015 FAMILY 2.9e-146 1-516
superfamily SSF48452 TPR-like 0.00016 48-252
Wolf-PSORT
Lj5g3v2111990.1	cyto 10, vacu 1.5, E.R._vacu 1.5, chlo 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2111990.1