Miyakogusa Predicted Gene
- Lj5g3v2099590.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6T770_SOYBN |
623 |
88.8 |
93.2 |
(tr|C6T770) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT2G14835.2 |
491 |
69.8 |
79.4 |
| Symbols: | RING/U-box superfamily protein | chr2:6367238-6370610 FORWARD LENGTH=343 |
| Medicago |
Medtr1g106530.1 |
615 |
88.1 |
93.2 |
| zinc finger protein, putative | HC | chr1:48164787-48160032 | 20130731 |
| Soybean |
Glyma10g40370.1 |
623 |
88.8 |
93.2 |
|
| LJGI |
gnl|LJGI|TC68490 |
1992 |
100.0 |
100.0 |
similar to UniRef100_A7QL61 Cluster: Chromosome chr3 scaffold_117, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_117, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2099590.1 |
length: 334 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| ProfileScan |
PS50089 |
ZF_RING_2 |
8.786 |
54-105 |
| no_ID |
|
| HMMPanther |
PTHR12981 |
ZINC |
1e-103 |
2-334 |
| HMMPanther |
PTHR12981:SF0 |
SUBFAMILY |
1e-103 |
2-334 |
| superfamily |
SSF57850 |
RING/U-box |
7.7e-07 |
49-112 |
- Wolf-PSORT
Lj5g3v2099590.1 chlo 3, cyto 2, mito 2, plas 2, vacu 2, mito_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2099590.1 |
|