Miyakogusa Predicted Gene

Lj5g3v2065190.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9HN26_POPTR 846 93.8 94.9 (tr|B9HN26) Tubulin alpha-5 chain OS=Populus trichocarpa GN=TUA5 PE=2 SV=1
TAIR_pep AT1G50010.1 843 93.1 95.4 | Symbols: TUA2 | tubulin alpha-2 chain | chr1:18517737-18519729 FORWARD LENGTH=450
Medicago Medtr1g106005.1 845 93.8 94.9 | tubulin beta-1 chain | HC | chr1:47930116-47927183 | 20130731
Soybean Glyma20g27280.1 845 93.8 94.9  
LJGI gnl|LJGI|TC62930 2658 99.8 99.8 homologue to UniRef100_A9PL19 Cluster: Alpha-tubulin; n=2; Gossypium hirsutum|Rep: Alpha-tubulin - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2065190.1 length: 450 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
FPrintScan PR01161 TUBULIN 8.6e-90 10-30
53-72
95-106
108-132
134-152
153-174
178-191
192-212
380-408
HMMPanther PTHR11588 TUBULIN 0 1-450
IPR002452 Alpha tubulin
Molecular Function GO:0005200 structural constituent of cytoskeleton    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
FPrintScan PR01162 ALPHATUBULIN 1.2e-116 18-33
45-58
88-101
120-128
148-160
161-172
214-226
274-289
321-342
347-360
360-379
385-401
422-438
IPR003008 Tubulin/FtsZ, GTPase domain
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.40.50.1440 no description 3.8e-125 1-268
HMMPfam PF00091 Tubulin 6.3e-69 3-225
HMMSmart SM00864 Tubulin/FtsZ 2.3e-70 49-246
superfamily SSF52490 Tubulin 1.2e-94 1-245
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
superfamily SSF55307 Tubulin 1.7e-82 246-440
IPR017975 Tubulin, conserved site
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
PatternScan PS00227 TUBULIN NA 142-148
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.30.1330.20 no description 1.6e-55 269-383
HMMPfam PF03953 Tubulin_C 1.9e-50 263-392
HMMSmart SM00865 Tubulin/FtsZ 1.7e-52 248-393
IPR023123 Tubulin, C-terminal
Gene3D G3DSA:1.10.287.600 no description 6.3e-28 385-438
no_ID  
Coil coil coiled-coil NA 418-439
Seg seg seg NA 142-158
433-449
Wolf-PSORT
Lj5g3v2065190.1	cyto 10, cysk 2, chlo 1, nucl 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2065190.1