Miyakogusa Predicted Gene

Lj5g3v2058550.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LLB3_SOYBN 1875 85.6 91.2 (tr|K7LLB3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G06010.1 1486 70.0 81.3 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102

Medicago Medtr1g105050.1 1800 81.9 89.7 | chromatin remodeling factor, putative | HC | chr1:47349899-47341180 | 20130731

Soybean Glyma20g28120.1 1843 81.7 87.3

LJGI gnl|LJGI|TC68024 850 84.8 84.8 similar to UniRef100_A7NWI8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v2058550.1 length: 1079 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 1.3e-87 379-668

IPR001650 Helicase, C-terminal

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004386 helicase activity

Molecular Function GO:0005524 ATP binding

HMMPfam PF00271 Helicase_C 3.2e-16 720-799

HMMSmart SM00490 helicase 2e-25 715-799

ProfileScan PS51194 HELICASE_CTER 17.535 689-856

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

HMMSmart SM00487 DEAD-like 1.2e-37 372-565

ProfileScan PS51192 HELICASE_ATP_BIND_1 25.360 388-554

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 2.2e-70 350-601
603-853

no_ID

Coil coil coiled-coil NA 887-908

Gene3D G3DSA:3.40.50.300 no description 5.1e-25 361-551
679-827

HMMPanther PTHR10799 SWI/SNF-RELATED 1.2e-253 7-1024

Seg seg seg NA 272-289
1060-1074

Wolf-PSORT

Lj5g3v2058550.1 nucl 5, cyto 5, cyto_nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v2058550.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LLB3_SOYBN	1875	85.6	91.2	(tr\|K7LLB3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G06010.1	1486	70.0	81.3	\| Symbols: ATCHR12 \| Homeotic gene regulator \| chr3:1802435-1807284 REVERSE LENGTH=1102
Medicago	Medtr1g105050.1	1800	81.9	89.7	\| chromatin remodeling factor, putative \| HC \| chr1:47349899-47341180 \| 20130731
Soybean	Glyma20g28120.1	1843	81.7	87.3
LJGI	gnl\|LJGI\|TC68024	850	84.8	84.8	similar to UniRef100_A7NWI8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

IPR000330	SNF2-related
Lj5g3v2058550.1				length: 1079 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	1.3e-87	379-668
IPR001650	Helicase, C-terminal
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004386	helicase activity
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00271	Helicase_C	3.2e-16	720-799
HMMSmart	SM00490	helicase	2e-25	715-799
ProfileScan	PS51194	HELICASE_CTER	17.535	689-856
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
HMMSmart	SM00487	DEAD-like	1.2e-37	372-565
ProfileScan	PS51192	HELICASE_ATP_BIND_1	25.360	388-554
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	2.2e-70	350-601 603-853
no_ID
Coil	coil	coiled-coil	NA	887-908
Gene3D	G3DSA:3.40.50.300	no description	5.1e-25	361-551 679-827
HMMPanther	PTHR10799	SWI/SNF-RELATED	1.2e-253	7-1024
Seg	seg	seg	NA	272-289 1060-1074