Miyakogusa Predicted Gene
- Lj5g3v2046010.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
J7HA66_MEDSA |
456 |
75.8 |
84.4 |
(tr|J7HA66) Frigida-like protein OS=Medicago sativa PE=2 SV=1 |
| TAIR_pep |
AT4G14900.1 |
400 |
66.1 |
78.3 |
| Symbols: | FRIGIDA-like protein | chr4:8521759-8523607 REVERSE LENGTH=532 |
| Medicago |
Medtr1g103710.1 |
458 |
76.4 |
85.7 |
| frigida-LIKE protein | HC | chr1:46944448-46941301 | 20130731 |
| Soybean |
Glyma20g28440.1 |
446 |
73.8 |
83.4 |
|
| LJGI |
gnl|LJGI|TC62634 |
1166 |
100.0 |
100.0 |
similar to UniRef100_A7NWN2 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (48%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2046010.1 |
length: 304 aa. |
| IPR012474 |
Frigida-like |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF07899 |
Frigida |
3.3e-50 |
121-301 |
| no_ID |
|
| HMMPanther |
PTHR31791 |
FAMILY |
1.7e-66 |
17-302 |
| Seg |
seg |
seg |
NA |
62-75 |
- Wolf-PSORT
Lj5g3v2046010.1 cyto 6, chlo 2, nucl 2, E.R. 2, mito 1, vacu 1, cysk_nucl 1, nucl_plas 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2046010.1 |
|