Miyakogusa Predicted Gene
- Lj5g3v2045310.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
I3S9R4_LOTJA |
427 |
100.0 |
100.0 |
(tr|I3S9R4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
TAIR_pep |
AT3G22845.1 |
342 |
78.2 |
89.1 |
| Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214 |
Medicago |
Medtr1g102720.1 |
368 |
87.7 |
90.6 |
| emp24/gp25L/p24 family protein | HC | chr1:46427897-46425652 | 20130731 |
Soybean |
Glyma10g38880.1 |
374 |
90.2 |
94.3 |
|
LJGI |
gnl|LJGI|TC58271 |
1207 |
100.0 |
100.0 |
similar to UniRef100_A7NWU4 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%) |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2045310.1 |
length: 203 aa. |
IPR009038 |
GOLD |
method |
AccNumber |
shortName |
E-value |
location |
Biological Process |
GO:0006810 |
transport |
|
|
Cellular Component |
GO:0016021 |
integral to membrane |
|
|
HMMPfam |
PF01105 |
EMP24_GP25L |
7.4e-41 |
33-203 |
ProfileScan |
PS50866 |
GOLD |
16.313 |
36-123 |
no_ID |
|
Coil |
coil |
coiled-coil |
NA |
145-166 |
HMMPanther |
PTHR22811 |
TRANSMEMBRANE |
1.7e-51 |
11-203 |
- Wolf-PSORT
Lj5g3v2045310.1 extr 3, E.R. 3, chlo 2, cyto 2, vacu 2, nucl 1, mito 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj5g3v2045310.1 |
Not targeted |
-57.865 |
-3.638 |
-14.561 |
86.29% |
-39.666
|