Miyakogusa Predicted Gene

Lj5g3v2013910.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N3P1_SOYBN 1665 76.8 83.2 (tr|K7N3P1) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G25540.1 1233 59.0 71.5 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Medicago Medtr1g100683.2 1691 78.3 84.8 | DNA mismatch repair MSH3-like protein | HC | chr1:45623820-45633367 | 20130731
Soybean Glyma20g29680.1 1261 75.6 82.4  
LJGI gnl|LJGI|AV407791 208 100.0 100.0 similar to UniRef100_A7QXI2 Cluster: Chromosome undetermined scaffold_225, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_225, whole genome shotgun sequence - Vitis vinifera (Grape), partial (3%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2013910.1 length: 1098 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF00488 MutS_V 2.1e-81 764-1010
HMMSmart SM00534 ATPase 2.1e-101 808-1007
PatternScan PS00486 DNA_MISMATCH_REPAIR_2 NA 889-905
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF01624 MutS_I 4.6e-27 115-225
IPR007696 DNA mismatch repair protein MutS, core
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05192 MutS_III 6.9e-33 430-756
HMMSmart SM00533 DNA-binding 2e-66 446-791
superfamily SSF48334 DNA 1.5e-52 429-763
IPR007860 DNA mismatch repair protein MutS, connector domain
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
Gene3D G3DSA:3.30.420.110 no description 8.2e-06 354-383
HMMPfam PF05188 MutS_II 7.1e-10 242-334
IPR007861 DNA mismatch repair protein MutS, clamp
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05190 MutS_IV 7.7e-06 634-706
IPR016151 DNA mismatch repair protein MutS, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
Gene3D G3DSA:3.40.1170.10 no description 1.5e-34 109-224
superfamily SSF55271 DNA 2.4e-32 102-223
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.1e-56 764-1013
no_ID  
Gene3D G3DSA:1.10.1420.10 no description 1.8e-32 426-664
Gene3D G3DSA:3.40.50.300 no description 1.2e-73 764-1009
HMMPanther PTHR11361 DNA 0 8-1016
HMMPanther PTHR11361:SF68 DNA 0 8-1016
Seg seg seg NA 15-42
60-76
740-749
Wolf-PSORT
Lj5g3v2013910.1	chlo 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2013910.1 Not targeted -22.041 -0.059 -3.129 15.87% -18.853