Miyakogusa Predicted Gene
- Lj5g3v2013850.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SLV1_LOTJA |
279 |
100.0 |
100.0 |
(tr|I3SLV1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G23750.2 |
142 |
67.2 |
79.0 |
| Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201 |
| Medicago |
Medtr1g100647.1 |
179 |
72.1 |
82.3 |
| carboxy-terminal region remorin | HC | chr1:45590830-45593341 | 20130731 |
| Soybean |
Glyma10g38080.1 |
216 |
81.7 |
87.3 |
|
| LJGI |
gnl|LJGI|TC64000 |
1106 |
100.0 |
100.0 |
similar to UniRef100_Q8LC13 Cluster: Remorin; n=1; Arabidopsis thaliana|Rep: Remorin - Arabidopsis thaliana (Mouse-ear cress), partial (68%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2013850.1 |
length: 186 aa. |
| IPR005516 |
Remorin, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03763 |
Remorin_C |
1e-21 |
104-186 |
| IPR005518 |
Remorin, N-terminal |
| HMMPfam |
PF03766 |
Remorin_N |
7.3e-11 |
47-101 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
140-168 |
| HMMPanther |
PTHR31775 |
FAMILY |
3.9e-50 |
18-186 |
| Seg |
seg |
seg |
NA |
6-41 |
- Wolf-PSORT
Lj5g3v2013850.1 nucl 10, plas 2, chlo 1, cyto 1, golg_plas 1, cysk_plas 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2013850.1 |
|