Miyakogusa Predicted Gene

Lj5g3v1986500.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LDL0_SOYBN 1293 71.4 80.1 (tr|I1LDL0) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G52850.1 763 44.2 62.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:21414935-21417616 REVERSE LENGTH=893
Medicago Medtr1g099590.1 1214 67.9 77.6 | pentatricopeptide (PPR) repeat protein | HC | chr1:44985847-44989750 | 20130731
Soybean Glyma10g37450.1 1261 71.3 80.1  
LJGI gnl|LJGI|TC66232 1068 91.6 91.6 weakly similar to UniRef100_A7QGA5 Cluster: Chromosome undetermined scaffold_91, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_91, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1986500.1 length: 859 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.21 458-481
559-582
603-630
641-664
HMMPfam PF13041 PPR_2 4e-10 80-126
181-221
281-326
382-430
HMMPfam PF13812 PPR_3 0.56 486-514
HMMTigr TIGR00756 PPR: 1.1e-05 82-116
183-217
284-316
385-419
ProfileScan PS51375 PPR 6.226 80-114
49-79
115-149
181-215
281-315
250-280
316-350
383-417
484-518
453-483
418-452
601-631
554-588
519-553
637-667
703-737
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6.2e-07 551-718
no_ID  
HMMPanther PTHR24015 FAMILY 2.1e-206 47-859
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 2.1e-206 47-859
HMMPfam PF14432 DYW_deaminase 7.8e-07 755-849
Seg seg seg NA 44-60
222-238
321-336
521-534
832-844
Wolf-PSORT
Lj5g3v1986500.1	chlo 8, mito 4, cyto 1, E.R. 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1986500.1