Miyakogusa Predicted Gene
- Lj5g3v1961210.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7ID28_MEDTR |
310 |
76.0 |
87.0 |
(tr|G7ID28) Multidrug resistance protein ABC transporter family OS=Medicago truncatula GN=MTR_1g099280 PE=3 SV=1 |
| TAIR_pep |
AT3G59140.1 |
216 |
56.2 |
70.3 |
| Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453 |
| Medicago |
Medtr1g099280.1 |
310 |
76.0 |
87.0 |
| ABC transporter-like family-protein | HC | chr1:44809048-44816157 | 20130731 |
| Soybean |
Glyma10g37160.1 |
298 |
76.0 |
84.4 |
|
| LJGI |
gnl|LJGI|FS339047 |
174 |
90.3 |
90.3 |
weakly similar to UniRef100_A7QTU6 Cluster: Chromosome undetermined scaffold_171, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_171, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1961210.1 |
length: 192 aa. |
| IPR001140 |
ABC transporter, transmembrane domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF00664 |
ABC_membrane |
1.6e-06 |
110-192 |
| IPR011527 |
ABC transporter, transmembrane domain, type 1 |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| superfamily |
SSF90123 |
ABC |
1.8e-11 |
77-192 |
| IPR017940 |
ABC transporter, integral membrane type 1 |
| ProfileScan |
PS50929 |
ABC_TM1F |
11.829 |
110-192 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1560.10 |
no description |
4.3e-11 |
111-192 |
| HMMPanther |
PTHR24223 |
FAMILY |
2.1e-96 |
1-192 |
| HMMPanther |
PTHR24223:SF107SUBFAMILY |
NOT |
2.1e-96 |
1-192 |
| Seg |
seg |
seg |
NA |
164-179 |
- Wolf-PSORT
Lj5g3v1961210.1 E.R. 4.5, nucl 4, cyto_E.R. 3, golg 2, plas 1, extr 1, cysk 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1961210.1 |
|