Miyakogusa Predicted Gene

Lj5g3v1959090.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LDH8_SOYBN 401 79.4 86.6 (tr|I1LDH8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G21320.2 227 51.0 63.3 | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253
Medicago Medtr1g099190.1 373 73.7 82.0 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr1:44752922-44747555 | 20130731
Soybean Glyma10g37090.1 401 79.4 86.6  
LJGI gnl|LJGI|TC73260 1497 99.9 99.9 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1; Medicago truncatula|Rep: RNA-binding protein - Medicago truncatula (Barrel medic), partial (62%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1959090.1 length: 252 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.8e-11 155-223
HMMSmart SM00360 RNA 6.1e-07 154-228
ProfileScan PS50102 RRM 11.793 153-239
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.8e-19 143-238
IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Molecular Function GO:0017069 snRNA binding    
HMMPanther PTHR10501 U1 6.8e-28 21-252
no_ID  
HMMPanther PTHR10501:SF0 SMALL 6.8e-28 21-252
Seg seg seg NA 87-104
superfamily SSF54928 RNA-binding 4.1e-14 138-245
Wolf-PSORT
Lj5g3v1959090.1	nucl 6, chlo 3, mito 3, cyto_nucl 3, chlo_mito 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1959090.1