Miyakogusa Predicted Gene

Lj5g3v1953000.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7ID01_MEDTR 1316 65.0 70.0 (tr|G7ID01) Eukaryotic translation initiation factor 5B OS=Medicago truncatula GN=MTR_1g099000 PE=4 SV=1
TAIR_pep AT1G76810.1 1065 66.3 74.9 | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294
Medicago Medtr1g099000.1 1332 65.4 70.4 | translation initiation factor | HC | chr1:44623289-44631742 | 20130731
Soybean Glyma20g30590.1 1266 78.8 85.1  
LJGI gnl|LJGI|CB829371 928 99.6 99.6 similar to UniRef100_Q8H6S8 Cluster: Translation initiation factor; n=1; Pisum sativum|Rep: Translation initiation factor - Pisum sativum (Garden pea), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1953000.1 length: 1378 aa.
IPR000795 Elongation factor, GTP-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
FPrintScan PR00315 ELONGATNFCT 6.6e-07 789-802
853-863
869-880
905-914
HMMPfam PF00009 GTP_EFTU 1.9e-32 788-996
IPR004161 Translation elongation factor EFTu/EF1A, domain 2
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03144 GTP_EFTU_D2 8e-11 1024-1102
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 6.7e-16 790-914
IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel
superfamily SSF50447 Translation 9.6e-35 1245-1378
IPR015760 Translation initiation factor IF- 2
HMMPanther PTHR23115:SF41 TRANSLATION 0 527-1377
IPR023115 Translation initiation factor IF- 2, domain 3
Gene3D G3DSA:3.40.50.10050 no description 5.8e-29 1134-1214
HMMPfam PF11987 IF-2 3.1e-21 1119-1227
superfamily SSF52156 Initiation 1.4e-34 1110-1244
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.4e-69 771-1078
no_ID  
Coil coil coiled-coil NA 461-490
521-588
Gene3D G3DSA:2.40.30.10 no description 8.3e-38 1005-1115
1247-1344
Gene3D G3DSA:3.40.50.300 no description 7.1e-39 787-998
HMMPanther PTHR23115 TRANSLATION 0 527-1377
Seg seg seg NA 18-25
42-81
85-127
142-155
168-181
188-202
210-233
241-253
262-278
284-303
335-353
382-405
425-436
467-489
494-515
529-588
664-707
723-733
1227-1240
Wolf-PSORT
Lj5g3v1953000.1	cyto 7, nucl 5, chlo 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1953000.1