Miyakogusa Predicted Gene

Lj5g3v1889580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH63_SOYBN 999 78.0 85.2 (tr|I1NH63) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G22760.1 639 54.4 69.2 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055599-8058799 FORWARD LENGTH=660
Medicago Medtr1g097440.2 995 77.0 85.8 | polyadenylate-binding protein | HC | chr1:43966152-43970565 | 20130731
Soybean Glyma20g31120.1 999 78.0 85.2  
LJGI gnl|LJGI|FS326828 1154 100.0 100.0 similar to UniRef100_A7QRL0 Cluster: Chromosome undetermined scaffold_151, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_151, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1889580.1 length: 658 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.1e-20 41-111
129-197
220-287
324-392
HMMSmart SM00360 RNA 4.2e-25 40-113
128-200
219-292
323-395
ProfileScan PS50102 RRM 19.536 39-117
127-204
218-296
322-399
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
Molecular Function GO:0003723 RNA binding    
Gene3D G3DSA:1.10.1900.10 no description 5.6e-25 566-641
HMMPfam PF00658 PABP 1.1e-25 567-637
HMMSmart SM00517 C-terminal 2.2e-32 576-640
ProfileScan PS51309 PABC 18.819 564-642
superfamily SSF63570 PABC 4.4e-32 472-647
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 0.66 40-113
128-200
219-291
323-395
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
Molecular Function GO:0003723 RNA binding    
HMMTigr TIGR01628 PABP-1234: 1.1e-225 39-638
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.6e-28 38-118
122-207
208-302
317-405
no_ID  
Coil coil coiled-coil NA 291-320
HMMPanther PTHR24011 FAMILY 2.5e-235 38-651
HMMPanther PTHR24011:SF45 SUBFAMILY 2.5e-235 38-651
Seg seg seg NA 2-31
482-499
530-545
564-576
superfamily SSF54928 RNA-binding 2.4e-44 215-406
38-211
Wolf-PSORT
Lj5g3v1889580.1	chlo 5, nucl 3, pero 3, chlo_mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1889580.1