Miyakogusa Predicted Gene

Lj5g3v1889480.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N408_SOYBN 752 84.2 90.4 (tr|K7N408) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
TAIR_pep AT1G34150.1 496 56.6 71.9 | Symbols: | Pseudouridine synthase family protein | chr1:12436086-12439237 FORWARD LENGTH=446
Medicago Medtr1g097390.1 625 76.9 85.2 | tRNA pseudouridine synthase A | HC | chr1:43937515-43930054 | 20130731
Soybean Glyma10g36410.1 546 78.0 84.3  
LJGI gnl|LJGI|BW624793 809 99.8 99.8 similar to UniRef100_Q9FX23 Cluster: Pseudouridylate synthase; n=1; Arabidopsis thaliana|Rep: Pseudouridylate synthase - Arabidopsis thaliana (Mouse-ear cress), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1889480.2 length: 427 aa.
IPR001406 Pseudouridine synthase I, TruA
method AccNumber shortName E-value location
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HAMAP MF_00171 TruA 24.166 82-342
HMMPanther PTHR11142 PSEUDOURIDYLATE 2.9e-98 20-421
HMMTigr TIGR00071 hisT_truA: 1.3e-53 83-332
IPR020094 Pseudouridine synthase I, TruA, N-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.580 no description 6.4e-28 81-210
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.660 no description 2.5e-27 213-343
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF01416 PseudoU_synth_1 4.3e-20 88-209
235-343
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 4.6e-65 79-360
no_ID  
Coil coil coiled-coil NA 11-32
Wolf-PSORT
Lj5g3v1889480.2	cyto 9, nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1889480.2