Miyakogusa Predicted Gene

Lj5g3v1888380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH73_SOYBN 681 68.8 74.5 (tr|I1NH73) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G71800.1 312 43.1 52.7 | Symbols: CSTF64 | cleavage stimulating factor 64 | chr1:26999606-27001850 FORWARD LENGTH=461
Medicago Medtr1g097280.1 605 62.9 70.3 | cleavage stimulating factor, putative | HC | chr1:43879642-43873268 | 20130731
Soybean Glyma20g31220.1 681 68.8 74.5  
LJGI gnl|LJGI|TC59300 1368 99.9 99.9 similar to UniRef100_A7QRN6 Cluster: Chromosome undetermined scaffold_151, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_151, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1888380.1 length: 526 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.6e-22 11-81
HMMSmart SM00360 RNA 5.8e-28 10-83
ProfileScan PS50102 RRM 19.229 9-87
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.1e-30 4-102
IPR025742 Cleavage stimulation factor subunit 2, hinge domain
HMMPfam PF14327 CSTF2_hinge 4.9e-19 156-231
IPR026896 Transcription termination and cleavage factor C-terminal domain
HMMPfam PF14304 CSTF_C 7.1e-06 488-523
no_ID  
HMMPanther PTHR23139 RNA-BINDING 5.8e-129 9-526
HMMPanther PTHR23139:SF13 CLEAVAGE 5.8e-129 9-526
Seg seg seg NA 133-144
153-167
471-482
497-520
superfamily SSF54928 RNA-binding 9.6e-31 2-108
Wolf-PSORT
Lj5g3v1888380.1	nucl 9, cyto 2, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1888380.1