Miyakogusa Predicted Gene

Lj5g3v1853080.4
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I9N3_MEDTR 1082 69.9 79.9 (tr|G7I9N3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g095880 PE=4 SV=1
TAIR_pep AT2G16880.1 632 46.6 64.9 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7312262-7314493 REVERSE LENGTH=743
Medicago Medtr1g095880.1 1085 69.9 79.8 | PPR containing plant-like protein | HC | chr1:43173038-43169315 | 20130731
Soybean Glyma10g35800.1 669 73.0 83.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1853080.4 length: 755 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1 444-473
703-727
HMMPfam PF12854 PPR_1 1.6e-08 263-294
HMMPfam PF13041 PPR_2 2.7e-16 196-245
301-348
371-417
477-524
550-595
617-665
HMMPfam PF13812 PPR_3 0.069 132-158
HMMTigr TIGR00756 PPR: 0.00078 200-232
234-267
270-303
305-338
339-373
374-408
409-442
479-513
514-548
552-583
584-613
619-652
654-679
ProfileScan PS51375 PPR 7.443 124-158
159-196
197-231
232-266
267-301
302-336
337-371
372-406
407-441
477-511
442-476
512-546
547-581
582-616
617-651
652-686
695-729
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3e-05 457-720
no_ID  
HMMPanther PTHR24015 FAMILY 1.8e-192 65-683
HMMPanther PTHR24015:SF0 SUBFAMILY 1.8e-192 65-683
Seg seg seg NA 67-85
159-170
173-184
superfamily SSF81901 HCP-like 7.4e-05 488-685
270-484
Wolf-PSORT
Lj5g3v1853080.4	cyto 8, nucl 3, chlo 1, plas 1, cysk 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1853080.4