database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | G7I9N3_MEDTR | 1082 | 69.9 | 79.9 | (tr|G7I9N3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g095880 PE=4 SV=1 |
TAIR_pep | AT2G16880.1 | 632 | 46.6 | 64.9 | | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7312262-7314493 REVERSE LENGTH=743 |
Medicago | Medtr1g095880.1 | 1085 | 69.9 | 79.8 | | PPR containing plant-like protein | HC | chr1:43173038-43169315 | 20130731 |
Soybean | Glyma10g35800.1 | 669 | 73.0 | 83.8 | |
LJGI | --No_Hits-- |
Lj5g3v1853080.4 | length: 755 aa. | |||
IPR002885 | Pentatricopeptide repeat | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
HMMPfam | PF01535 | PPR | 1 | 444-473 703-727 |
HMMPfam | PF12854 | PPR_1 | 1.6e-08 | 263-294 |
HMMPfam | PF13041 | PPR_2 | 2.7e-16 | 196-245 301-348 371-417 477-524 550-595 617-665 |
HMMPfam | PF13812 | PPR_3 | 0.069 | 132-158 |
HMMTigr | TIGR00756 | PPR: | 0.00078 | 200-232 234-267 270-303 305-338 339-373 374-408 409-442 479-513 514-548 552-583 584-613 619-652 654-679 |
ProfileScan | PS51375 | PPR | 7.443 | 124-158 159-196 197-231 232-266 267-301 302-336 337-371 372-406 407-441 477-511 442-476 512-546 547-581 582-616 617-651 652-686 695-729 |
IPR011990 | Tetratricopeptide-like helical | |||
Molecular Function | GO:0005515 | protein binding | ||
Gene3D | G3DSA:1.25.40.10 | no description | 3e-05 | 457-720 |
no_ID | ||||
HMMPanther | PTHR24015 | FAMILY | 1.8e-192 | 65-683 |
HMMPanther | PTHR24015:SF0 | SUBFAMILY | 1.8e-192 | 65-683 |
Seg | seg | seg | NA | 67-85 159-170 173-184 |
superfamily | SSF81901 | HCP-like | 7.4e-05 | 488-685 270-484 |
Lj5g3v1853080.4 cyto 8, nucl 3, chlo 1, plas 1, cysk 1, cysk_plas 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj5g3v1853080.4 |