Miyakogusa Predicted Gene

Lj5g3v1796850.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q40210_LOTJA 414 100.0 100.0 (tr|Q40210) RAB5B OS=Lotus japonicus GN=rab5B PE=2 SV=1
TAIR_pep AT3G54840.1 347 86.4 89.9 | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-related small GTP-binding family protein | chr3:20318597-20320782 FORWARD LENGTH=202
Medicago Medtr1g094220.1 382 93.5 95.5 | small GTPase family RAB protein | HC | chr1:42431733-42425453 | 20130731
Soybean Glyma10g35230.1 391 95.0 96.0  
LJGI gnl|LJGI|TC62159 1195 100.0 100.0 UniRef100_Q40210 Cluster: RAB5B; n=1; Lotus japonicus|Rep: RAB5B - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1796850.1 length: 200 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2.6e-38 33-54
56-72
75-97
137-150
172-194
HMMPfam PF00071 Ras 1.1e-57 34-194
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 8.7e-13 35-197
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 2.3e-79 33-197
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 2e-27 33-190
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 1.1e-26 34-197
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.5e-61 28-199
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.2e-65 28-197
HMMPanther PTHR24073 FAMILY 2.9e-133 3-196
HMMPanther PTHR24073:SF211SUBFAMILY NOT 2.9e-133 3-196
ProfileScan PS51419 RAB 32.339 27-200
Wolf-PSORT
Lj5g3v1796850.1	chlo 6, cyto 3, nucl 2, mito 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1796850.1