Miyakogusa Predicted Gene

Lj5g3v1770460.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1NHN4_SOYBN 768 63.8 73.7 (tr|I1NHN4) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT3G52240.1 201 31.4 47.0 | Symbols: | unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:19372902-19375799 REVERSE LENGTH=680

Medicago Medtr1g492840.1 753 61.7 71.4 | hypothetical protein | HC | chr1:41636932-41631601 | 20130731

Soybean Glyma20g32910.1 691 60.0 69.6

LJGI gnl|LJGI|TC76559 1495 100.0 100.0 similar to UniRef100_A7QBH3 Cluster: Chromosome chr13 scaffold_74, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_74, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v1770460.1 length: 662 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 41-76
265-296

Seg seg seg NA 165-180
211-223
235-249

Wolf-PSORT

Lj5g3v1770460.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v1770460.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1NHN4_SOYBN	768	63.8	73.7	(tr\|I1NHN4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT3G52240.1	201	31.4	47.0	\| Symbols: \| unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). \| chr3:19372902-19375799 REVERSE LENGTH=680
Medicago	Medtr1g492840.1	753	61.7	71.4	\| hypothetical protein \| HC \| chr1:41636932-41631601 \| 20130731
Soybean	Glyma20g32910.1	691	60.0	69.6
LJGI	gnl\|LJGI\|TC76559	1495	100.0	100.0	similar to UniRef100_A7QBH3 Cluster: Chromosome chr13 scaffold_74, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr13 scaffold_74, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

no_ID
Lj5g3v1770460.1				length: 662 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	41-76 265-296
Seg	seg	seg	NA	165-180 211-223 235-249