Miyakogusa Predicted Gene
- Lj5g3v1770450.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1NHN5_SOYBN |
401 |
84.2 |
89.9 |
(tr|I1NHN5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G46160.1 |
83.2 |
42.6 |
57.4 |
| Symbols: | RING/U-box superfamily protein | chr2:18963109-18963753 FORWARD LENGTH=214 |
| Medicago |
Medtr1g492830.1 |
354 |
75.5 |
83.0 |
| anaphase-promoting complex subunit 11 RING-H2 finger protein | HC | chr1:41629633-41626608 | 20130731 |
| Soybean |
Glyma20g32920.1 |
401 |
84.2 |
89.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1770450.1 |
length: 228 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF13639 |
zf-RING_2 |
1.9e-15 |
87-130 |
| HMMSmart |
SM00184 |
Ring |
3e-08 |
88-129 |
| ProfileScan |
PS50089 |
ZF_RING_2 |
13.035 |
88-130 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
4.1e-18 |
84-133 |
| no_ID |
|
| HMMPanther |
PTHR14155 |
RING |
8.4e-44 |
1-157 |
| HMMPanther |
PTHR14155:SF42 |
SUBFAMILY |
8.4e-44 |
1-157 |
| superfamily |
SSF57850 |
RING/U-box |
1.2e-20 |
60-136 |
- Wolf-PSORT
Lj5g3v1770450.1 chlo 8, extr 4, chlo_mito 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1770450.1 |
|