Miyakogusa Predicted Gene
- Lj5g3v1699200.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LCN7_SOYBN |
481 |
97.0 |
99.6 |
(tr|I1LCN7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G62020.1 |
449 |
88.6 |
97.0 |
| Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216 |
| Medicago |
Medtr1g090827.1 |
469 |
94.5 |
97.5 |
| coatomer subunit alpha-like protein | HC | chr1:40855860-40850967 | 20130731 |
| Soybean |
Glyma10g34310.1 |
481 |
97.0 |
99.6 |
|
| LJGI |
gnl|LJGI|TC75611 |
862 |
90.3 |
90.3 |
UniRef100_Q70I39 Cluster: Coatomer alpha subunit-like protein; n=1; Lotus japonicus|Rep: Coatomer alpha subunit-like protein - Lotus japonicus, complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1699200.1 |
length: 237 aa. |
| IPR006692 |
Coatomer, WD associated region |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005198 |
structural molecule activity |
|
|
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Biological Process |
GO:0016192 |
vesicle-mediated transport |
|
|
| Cellular Component |
GO:0030117 |
membrane coat |
|
|
| HMMPfam |
PF04053 |
Coatomer_WDAD |
1.7e-88 |
2-237 |
| no_ID |
|
| HMMPanther |
PTHR19876 |
COATOMER |
1.9e-141 |
1-237 |
| HMMPanther |
PTHR19876:SF1 |
COATOMER |
1.9e-141 |
1-237 |
- Wolf-PSORT
Lj5g3v1699200.1 cyto 8.5, cyto_E.R. 5, nucl 2, mito 1, extr 1, golg 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1699200.1 |
|