Miyakogusa Predicted Gene

Lj5g3v1698940.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N4G3_SOYBN 362 81.1 88.7 (tr|K7N4G3) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G03530.1 288 65.9 78.7 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210
Medicago Medtr1g090717.1 358 83.0 85.8 | RAB GTPase-like protein A5B | HC | chr1:40716435-40711176 | 20130731
Soybean Glyma10g34120.1 357 80.2 87.3  
LJGI gnl|LJGI|TC58877 71.9 79.2 79.2 homologue to UniRef100_A7NSN5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1698940.1 length: 212 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 1.8e-34 16-37
40-56
58-80
122-135
157-179
HMMPfam PF00071 Ras 8.3e-53 17-180
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 0.0012 21-212
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 7.7e-12 18-182
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 6.3e-89 16-182
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.4e-29 14-173
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 4.7e-29 13-182
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.2e-62 11-211
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.9e-64 9-211
HMMPanther PTHR24073 FAMILY 2.8e-108 9-212
HMMPanther PTHR24073:SF285SUBFAMILY NOT 2.8e-108 9-212
ProfileScan PS51419 RAB 31.375 11-212
Seg seg seg NA 29-42
Wolf-PSORT
Lj5g3v1698940.1	nucl 5, extr 5, chlo 3, cyto_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1698940.1