Miyakogusa Predicted Gene

Lj5g3v1697440.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I306_MEDTR 920 88.1 93.6 (tr|G7I306) U-box domain-containing protein OS=Medicago truncatula GN=MTR_070s0024 PE=4 SV=1
TAIR_pep AT3G06880.2 173 28.3 51.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264
Medicago Medtr1g090320.1 920 88.1 93.6 | E3 ubiquitin-protein ligase LIN-like protein, putative | HC | chr1:40463501-40471127 | 20130731
Soybean Glyma10g33860.1 408 88.5 92.5  
LJGI gnl|LJGI|TC75212 591 98.1 98.1 weakly similar to UniRef100_A7NSU7 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1697440.2 length: 497 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.018 220-244
253-285
466-494
HMMSmart SM00320 WD40 0.025 206-244
249-286
454-495
ProfileScan PS50082 WD_REPEATS_2 10.642 231-244
256-289
463-497
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.1e-30 198-496
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 10.258 215-295
463-497
superfamily SSF50978 WD40 3e-31 197-497
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 231-245
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 5.6e-06 231-245
273-287
482-496
no_ID  
Coil coil coiled-coil NA 125-146
HMMPanther PTHR22844 F-BOX 3.1e-19 216-497
Wolf-PSORT
Lj5g3v1697440.2	cyto 4, chlo 3, extr 3, cyto_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1697440.2