Miyakogusa Predicted Gene

Lj5g3v1697410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL D7T3A6_VITVI 1815 79.2 87.8 (tr|D7T3A6) Ubiquitin carboxyl-terminal hydrolase OS=Vitis vinifera GN=VIT_13s0073g00610 PE=3 SV=1
TAIR_pep AT3G11910.2 1706 74.5 84.7 | Symbols: UBP13 | ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1114
Medicago Medtr1g041240.2 1761 77.0 85.7 | ubiquitin carboxyl-terminal hydrolase-like protein | HC | chr1:18377688-18355186 | 20130731
Soybean Glyma02g43930.1 1751 76.7 85.8  
LJGI gnl|LJGI|AV408677 387 100.0 100.0 similar to UniRef100_A7Q028 Cluster: Chromosome chr8 scaffold_41, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_41, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1697410.1 length: 1127 aa.
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
method AccNumber shortName E-value location
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF00443 UCH 7.6e-53 207-530
ProfileScan PS50235 UCH_2_3 28.025 209-534
IPR002083 MATH
Molecular Function GO:0005515 protein binding    
HMMPfam PF00917 MATH 1.7e-15 72-190
HMMSmart SM00061 meprin 4.6e-21 67-170
ProfileScan PS50144 MATH 36.628 65-189
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 1.5e-39 62-201
IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
PatternScan PS00972 UCH_2_1 NA 210-225
PatternScan PS00973 UCH_2_2 NA 449-466
IPR024729 Peptidase C19 domain
HMMPfam PF12436 USP7 3e-10 545-577
no_ID  
Coil coil coiled-coil NA 10-31
542-574
Gene3D G3DSA:2.20.210.10 no description 3.5e-29 322-394
Gene3D G3DSA:2.60.210.10 no description 2.1e-23 61-190
HMMPanther PTHR24006 FAMILY 7.4e-291 18-799
HMMPanther PTHR24006:SF89 SUBFAMILY 7.4e-291 18-799
Seg seg seg NA 4-30
450-465
552-573
superfamily SSF54001 Cysteine 5.7e-98 203-566
Wolf-PSORT
Lj5g3v1697410.1	cyto 8, nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1697410.1