Miyakogusa Predicted Gene

Lj5g3v1682500.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M2X2_SOYBN 590 64.3 74.7 (tr|K7M2X2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G05120.1 450 59.6 70.2 | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833
Medicago Medtr4g049500.1 547 59.8 68.7 | RING/U-box helicase | HC | chr4:17406992-17415500 | 20130731
Soybean Glyma12g31910.1 577 61.4 73.2  
LJGI gnl|LJGI|TC81658 502 100.0 100.0 similar to UniRef100_A9TCP3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1682500.1 length: 521 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 3.1e-51 210-511
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.2e-25 203-493
ProfileScan PS51192 HELICASE_ATP_BIND_1 16.161 220-475
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.6e-55 152-521
no_ID  
Gene3D G3DSA:3.40.50.300 no description 7.7e-31 412-477
HMMPanther PTHR10799 SWI/SNF-RELATED 8.9e-118 17-521
HMMPanther PTHR10799:SF62 DNA 8.9e-118 17-521
Seg seg seg NA 18-33
44-62
146-156
492-505
Wolf-PSORT
Lj5g3v1682500.1	nucl 6, chlo 2, golg 2, cyto 1, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1682500.1