Miyakogusa Predicted Gene

Lj5g3v1671380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S8F7_LOTJA 132 83.6 83.6 (tr|I3S8F7) U1 small nuclear ribonucleoprotein C OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G03120.1 123 96.6 98.3 | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:1385747-1387331 FORWARD LENGTH=207
Medicago Medtr1g088990.1 126 80.6 81.9 | U1 small nuclear C-like ribonucleoprotein | HC | chr1:39976870-39974731 | 20130731
Soybean Glyma10g02680.1 129 80.8 82.2  
LJGI gnl|LJGI|TC69099 729 100.0 100.0 similar to UniRef100_Q84VV2 Cluster: At4g03120; n=1; Arabidopsis thaliana|Rep: At4g03120 - Arabidopsis thaliana (Mouse-ear cress), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1671380.1 length: 210 aa.
IPR000690 Zinc finger, C2H2-type matrin
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50171 ZF_MATRIN 12.658 4-36
IPR003604 Zinc finger, U1-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00451 U1-like 1.7e-12 1-37
IPR013085 Zinc finger, U1-C type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF06220 zf-U1 2.6e-22 1-38
IPR017340 U1 small nuclear ribonucleoprotein C
Biological Process GO:0000387 spliceosomal snRNP assembly    
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Cellular Component GO:0005685 U1 snRNP    
HAMAP MF_03153 U1_C 11.837 1-177
HMMPanther PTHR31148 FAMILY 4.4e-26 2-162
no_ID  
HMMPanther PTHR31148:SF0 SUBFAMILY 4.4e-26 2-162
Seg seg seg NA 59-70
74-96
98-148
150-177
superfamily SSF57667 C2H2 5.5e-19 1-61
Wolf-PSORT
Lj5g3v1671380.1	nucl 10, chlo 1, cyto 1, mito 1, plas 1, chlo_mito 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1671380.1