Miyakogusa Predicted Gene

Lj5g3v1627970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IF63_MEDTR 1439 74.5 82.0 (tr|G7IF63) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_1g088590 PE=4 SV=1
TAIR_pep AT2G47680.1 1023 57.2 70.6 | Symbols: | zinc finger (CCCH type) helicase family protein | chr2:19545828-19550871 REVERSE LENGTH=1015
Medicago Medtr1g088590.1 1453 75.5 83.2 | zinc finger CCCH domain protein | HC | chr1:39615599-39607040 | 20130731
Soybean Glyma17g37550.1 128 28.9 48.8  
LJGI gnl|LJGI|AV410705 656 100.0 100.0 similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1627970.1 length: 927 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00356 zinc 0.56 640-665
667-693
ProfileScan PS50103 ZF_C3H1 9.901 666-694
640-665
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 6.8e-10 212-298
HMMSmart SM00490 helicase 8.3e-11 196-299
ProfileScan PS51194 HELICASE_CTER 10.673 169-355
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 13.062 1-110
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-11 161-376
2-92
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.5e-09 2-94
183-310
HMMPanther PTHR18934 ATP-DEPENDENT 4.7e-87 2-398
Seg seg seg NA 392-405
410-424
752-768
superfamily SSF90229 CCCH 0.0064 637-665
668-700
Wolf-PSORT
Lj5g3v1627970.1	nucl 6, cyto 4, mito 1, plas 1, vacu 1, cysk 1, cysk_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1627970.1