database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | G7IF63_MEDTR | 1439 | 74.5 | 82.0 | (tr|G7IF63) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_1g088590 PE=4 SV=1 |
TAIR_pep | AT2G47680.1 | 1023 | 57.2 | 70.6 | | Symbols: | zinc finger (CCCH type) helicase family protein | chr2:19545828-19550871 REVERSE LENGTH=1015 |
Medicago | Medtr1g088590.1 | 1453 | 75.5 | 83.2 | | zinc finger CCCH domain protein | HC | chr1:39615599-39607040 | 20130731 |
Soybean | Glyma17g37550.1 | 128 | 28.9 | 48.8 | |
LJGI | gnl|LJGI|AV410705 | 656 | 100.0 | 100.0 | similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%) |
Lj5g3v1627970.1 | length: 927 aa. | |||
IPR000571 | Zinc finger, CCCH-type | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0003676 | nucleic acid binding | ||
Molecular Function | GO:0008270 | zinc ion binding | ||
HMMSmart | SM00356 | zinc | 0.56 | 640-665 667-693 |
ProfileScan | PS50103 | ZF_C3H1 | 9.901 | 666-694 640-665 |
IPR001650 | Helicase, C-terminal | |||
Molecular Function | GO:0003676 | nucleic acid binding | ||
Molecular Function | GO:0004386 | helicase activity | ||
Molecular Function | GO:0005524 | ATP binding | ||
HMMPfam | PF00271 | Helicase_C | 6.8e-10 | 212-298 |
HMMSmart | SM00490 | helicase | 8.3e-11 | 196-299 |
ProfileScan | PS51194 | HELICASE_CTER | 10.673 | 169-355 |
IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | |||
ProfileScan | PS51192 | HELICASE_ATP_BIND_1 | 13.062 | 1-110 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | |||
superfamily | SSF52540 | P-loop | 1.4e-11 | 161-376 2-92 |
no_ID | ||||
Gene3D | G3DSA:3.40.50.300 | no description | 2.5e-09 | 2-94 183-310 |
HMMPanther | PTHR18934 | ATP-DEPENDENT | 4.7e-87 | 2-398 |
Seg | seg | seg | NA | 392-405 410-424 752-768 |
superfamily | SSF90229 | CCCH | 0.0064 | 637-665 668-700 |
Lj5g3v1627970.1 nucl 6, cyto 4, mito 1, plas 1, vacu 1, cysk 1, cysk_plas 1, mito_plas 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj5g3v1627970.1 |