Miyakogusa Predicted Gene
- Lj5g3v1615820.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L7U6_SOYBN |
359 |
77.9 |
84.2 |
(tr|I1L7U6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G47590.1 |
295 |
65.8 |
77.0 |
| Symbols: PHR2 | photolyase/blue-light receptor 2 | chr2:19521888-19523732 FORWARD LENGTH=447 |
| Medicago |
Medtr1g088420.1 |
353 |
78.8 |
82.0 |
| photolyase/blue-light receptor PHR2 | HC | chr1:39533075-39538236 | 20130731 |
| Soybean |
Glyma10g02240.1 |
359 |
77.9 |
84.2 |
|
| LJGI |
gnl|LJGI|TC58437 |
1332 |
100.0 |
100.0 |
similar to UniRef100_Q8LB72 Cluster: Blue-light photoreceptor PHR2; n=2; Arabidopsis thaliana|Rep: Blue-light photoreceptor PHR2 - Arabidopsis thaliana (Mouse-ear cress), partial (76%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1615820.1 |
length: 222 aa. |
| IPR005101 |
DNA photolyase, FAD-binding/Cryptochrome, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003913 |
DNA photolyase activity |
|
|
| Biological Process |
GO:0006281 |
DNA repair |
|
|
| HMMPfam |
PF03441 |
FAD_binding_7 |
7.9e-11 |
97-208 |
| superfamily |
SSF48173 |
Cryptochrome/photolyase |
2.5e-15 |
88-202 |
| IPR006050 |
DNA photolyase, N-terminal |
| superfamily |
SSF52425 |
Cryptochrome/photolyase, |
3.5e-08 |
1-99 |
| no_ID |
|
| Gene3D |
G3DSA:1.25.40.80 |
no description |
7e-46 |
14-204 |
| HMMPanther |
PTHR11455 |
CRYPTOCHROME |
8.8e-50 |
1-205 |
| Seg |
seg |
seg |
NA |
165-183 |
- Wolf-PSORT
Lj5g3v1615820.1 nucl 5, mito 5, nucl_plas 4.5, plas 2, chlo 1, cyto 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1615820.1 |
Not targeted |
-33.304 |
-0.912 |
-5.147 |
37.79% |
-27.245
|