Miyakogusa Predicted Gene
- Lj5g3v1602330.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A5BE46_VITVI |
781 |
75.4 |
82.5 |
(tr|A5BE46) Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_025855 PE=4 SV=1 |
| TAIR_pep |
AT4G23160.1 |
231 |
45.7 |
64.2 |
| Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | chr4:12129485-12134086 FORWARD LENGTH=1262 |
| Medicago |
Medtr7g077610.1 |
58.9 |
33.1 |
39.3 |
| hypothetical protein | HC | chr7:29268736-29268318 | 20130731 |
| Soybean |
Glyma11g04990.1 |
593 |
59.6 |
70.2 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1602330.1 |
length: 493 aa. |
| IPR001584 |
Integrase, catalytic core |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0015074 |
DNA integration |
|
|
| ProfileScan |
PS50994 |
INTEGRASE |
10.703 |
1-67 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
2.8e-14 |
2-76 |
| IPR013103 |
Reverse transcriptase, RNA-dependent DNA polymerase |
| HMMPfam |
PF07727 |
RVT_2 |
8e-91 |
267-493 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.420.10 |
no description |
1.1e-09 |
2-71 |
| HMMPanther |
PTHR11439 |
GAG-POL-RELATED |
1.4e-180 |
1-493 |
| HMMPanther |
PTHR11439:SF127PREDICTED |
PROTEIN |
1.4e-180 |
1-493 |
| Seg |
seg |
seg |
NA |
120-138 |
| superfamily |
SSF56672 |
DNA/RNA |
3.8e-19 |
266-478 |
- Wolf-PSORT
Lj5g3v1602330.1 pero 7, mito 4, cyto_pero 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1602330.1 |
|