Miyakogusa Predicted Gene
- Lj5g3v1599600.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IDR1_MEDTR |
179 |
57.2 |
72.3 |
(tr|G7IDR1) Hybrid signal transduction histidine kinase I OS=Medicago truncatula GN=MTR_1g087130 PE=4 SV=1 |
| TAIR_pep |
AT2G47430.1 |
114 |
40.1 |
63.8 |
| Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122 |
| Medicago |
Medtr1g087140.1 |
179 |
57.2 |
72.3 |
| histidine kinase 1 | LC | chr1:39034365-39028256 | 20130731 |
| Soybean |
Glyma03g37760.1 |
166 |
54.7 |
73.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1599600.1 |
length: 182 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
1.3e-16 |
52-172 |
| HMMSmart |
SM00448 |
cheY-homologous |
1.8e-25 |
50-172 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
21.591 |
51-176 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
5.5e-26 |
47-175 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
2.4e-31 |
47-179 |
| HMMPanther |
PTHR24423 |
TWO |
9.1e-29 |
41-179 |
| HMMPanther |
PTHR24423:SF360HYBRID |
SIGNAL |
9.1e-29 |
41-179 |
| Seg |
seg |
seg |
NA |
3-18 |
- Wolf-PSORT
Lj5g3v1599600.1 cyto 6, nucl 4, chlo 1, extr 1, vacu 1, pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1599600.1 |
Not targeted |
-10.012 |
-0.103 |
-0.965 |
3.73% |
-8.944
|