Miyakogusa Predicted Gene
- Lj5g3v1573150.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S5G7_MEDTR |
204 |
59.1 |
73.3 |
(tr|I3S5G7) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT5G47500.1 |
96.3 |
46.5 |
66.3 |
| Symbols: | Pectin lyase-like superfamily protein | chr5:19271262-19272845 REVERSE LENGTH=362 |
| Medicago |
Medtr1g086540.1 |
203 |
67.1 |
81.9 |
| pectinesterase | HC | chr1:38723576-38725363 | 20130731 |
| Soybean |
Glyma02g46890.1 |
103 |
43.1 |
61.8 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1573150.1 |
length: 172 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
3.6e-21 |
68-169 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
1.2e-24 |
60-169 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
2.5e-29 |
66-169 |
| no_ID |
|
| HMMPanther |
PTHR31321 |
FAMILY |
1.2e-40 |
58-169 |
| HMMPanther |
PTHR31321:SF0 |
SUBFAMILY |
1.2e-40 |
58-169 |
| Seg |
seg |
seg |
NA |
11-24 |
- Wolf-PSORT
Lj5g3v1573150.1 extr 7, vacu 3, mito 2, chlo 1, cyto 1, cyto_mito 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1573150.1 |
|