Miyakogusa Predicted Gene

Lj5g3v1533550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NES2_SOYBN 979 79.5 85.6 (tr|I1NES2) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G26742.2 869 75.4 86.4 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | chr5:9285540-9288871 REVERSE LENGTH=748
Medicago Medtr5g090120.1 493 62.0 77.5 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr5:39247084-39252313 | 20130731
Soybean Glyma20g22120.1 979 79.5 85.6  
LJGI gnl|LJGI|TC57338 2020 99.2 99.2 similar to UniRef100_Q2HUZ8 Cluster: Helicase, C-terminal; Zinc finger, CCHC-type; GUCT; n=1; Medicago truncatula|Rep: Helicase, C-terminal; Zinc finger, CCHC-type; GUCT - Medicago truncatula (Barrel medic), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1533550.1 length: 756 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.2e-25 373-444
HMMSmart SM00490 helicase 1.1e-31 364-444
ProfileScan PS51194 HELICASE_CTER 23.276 339-484
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 1e-05 731-753
HMMPfam PF00098 zf-CCHC 4.9e-07 735-751
HMMSmart SM00343 zinc 1e-05 735-751
ProfileScan PS50158 ZF_CCHC 10.971 736-751
superfamily SSF57756 Retrovirus 5.3e-08 711-754
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.5e-46 128-299
IPR012562 GUCT
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF08152 GUCT 4.3e-20 531-633
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.7e-56 122-327
ProfileScan PS51192 HELICASE_ATP_BIND_1 29.975 134-310
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 8.002 103-131
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.5e-71 178-467
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.1e-48 98-319
320-476
HMMPanther PTHR24031 FAMILY 5.7e-238 98-741
HMMPanther PTHR24031:SF107HELICASE CONSERVED 5.7e-238 98-741
Seg seg seg NA 2-13
44-60
645-677
684-711
717-734
Wolf-PSORT
Lj5g3v1533550.1	chlo 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1533550.1