Miyakogusa Predicted Gene

Lj5g3v1533480.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL N0DK24_LOTJA 2132 94.0 94.0 (tr|N0DK24) Phytochrome A OS=Lotus japonicus GN=PHYA PE=4 SV=1
TAIR_pep AT1G09570.1 1725 74.7 84.8 | Symbols: PHYA, FHY2, FRE1, HY8 | phytochrome A | chr1:3095498-3099216 REVERSE LENGTH=1122
Medicago Medtr1g085160.1 1912 83.5 88.8 | phytochrome protein A | HC | chr1:38027094-38021769 | 20130731
Soybean Glyma20g22160.1 1918 83.5 89.5  
LJGI gnl|LJGI|TC78720 2157 99.9 99.9 similar to UniRef100_P42500 Cluster: Phytochrome A; n=1; Glycine max|Rep: Phytochrome A - Glycine max (Soybean), partial (32%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1533480.1 length: 1124 aa.
IPR000014 PAS domain
method AccNumber shortName E-value location
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00091 PAS 0.0001 619-685
749-818
HMMTigr TIGR00229 sensory_box: 2.6e-09 624-740
ProfileScan PS50112 PAS 13.387 617-687
750-802
superfamily SSF55785 PYP-like 1.8e-10 617-731
747-871
IPR001294 Phytochrome
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
FPrintScan PR01033 PHYTOCHROME 1.6e-109 133-155
233-252
318-339
431-451
516-535
549-567
620-636
639-654
712-729
732-752
IPR003018 GAF domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF01590 GAF 9.3e-39 219-401
HMMSmart SM00065 Domain 1.9e-10 218-411
IPR003594 Histidine kinase-like ATPase, ATP-binding domain
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.565.10 no description 4.1e-13 961-1113
HMMPfam PF02518 HATPase_c 2.2e-08 1006-1113
HMMSmart SM00387 Histidine 4.3e-08 1006-1118
superfamily SSF55874 ATPase 2.9e-12 961-1114
IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
Molecular Function GO:0000155 phosphorelay sensor kinase activity    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMPfam PF00512 HisKA 4.8e-06 898-954
HMMSmart SM00388 His 4e-05 894-959
IPR005467 Signal transduction histidine kinase, core
ProfileScan PS50109 HIS_KIN 33.441 901-1120
IPR012129 Phytochrome A/B/C/D/E
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009585 red, far-red light phototransduction    
Molecular Function GO:0009881 photoreceptor activity    
Biological Process GO:0017006 protein-tetrapyrrole linkage    
Molecular Function GO:0042803 protein homodimerization activity    
HMMPIR PIRSF000084 Phytochrome, 0 1-1124
IPR013515 Phytochrome, central region
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
Biological Process GO:0018298 protein-chromophore linkage    
HMMPfam PF00360 PHY 3.8e-71 412-589
IPR013516 Phytochrome chromophore binding site
Biological Process GO:0018298 protein-chromophore linkage    
PatternScan PS00245 PHYTOCHROME_1 NA 318-327
IPR013654 PAS fold-2
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF08446 PAS_2 9.2e-40 69-185
IPR013767 PAS fold
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00989 PAS 9.8e-24 620-734
750-872
IPR016132 Phytochrome chromophore attachment domain
Biological Process GO:0018298 protein-chromophore linkage    
ProfileScan PS50046 PHYTOCHROME_2 63.035 218-391
no_ID  
Gene3D G3DSA:3.30.450.20 no description 9.9e-09 623-748
767-872
HMMPanther PTHR24423 TWO 2.7e-23 606-1117
Seg seg seg NA 2-21
39-48
341-356
479-491
943-957
1083-1094
superfamily SSF55781 GAF 2.3e-06 218-412
Wolf-PSORT
Lj5g3v1533480.1	chlo 5, nucl 5, mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1533480.1