Miyakogusa Predicted Gene

Lj5g3v1533400.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SAA1_LOTJA 546 95.3 95.3 (tr|I3SAA1) Flap endonuclease 1 OS=Lotus japonicus GN=FEN1 PE=2 SV=1
TAIR_pep AT5G26680.2 457 77.8 88.0 | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383
Medicago Medtr1g085130.1 486 85.1 90.2 | flap endonuclease 1-A | HC | chr1:38000945-38008617 | 20130731
Soybean Glyma20g22190.3 496 85.6 91.4  
LJGI gnl|LJGI|TC60113 1049 100.0 100.0 similar to UniRef100_A7PRG5 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (80%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1533400.3 length: 290 aa.
IPR006084 XPG/Rad2 endonuclease
method AccNumber shortName E-value location
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00853 XPGRADSUPER 3.3e-23 54-71
75-95
132-147
HMMPanther PTHR11081 XP-G/RAD2 2.1e-128 1-290
IPR006086 XPG-I domain
Molecular Function GO:0004518 nuclease activity    
HMMPfam PF00867 XPG_I 1.1e-31 55-142
HMMSmart SM00484 Xeroderma 2.1e-34 55-127
IPR008918 Helix-hairpin-helix motif, class 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
HMMSmart SM00279 Helix-hairpin-helix 6.5e-13 129-162
IPR019974 XPG conserved site
Molecular Function GO:0016788 hydrolase activity, acting on ester bonds    
PatternScan PS00842 XPG_2 NA 58-72
IPR020045 5'-3' exonuclease, C-terminal domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
superfamily SSF47807 5' 1.1e-41 127-267
IPR023426 Flap structure-specific endonuclease
Molecular Function GO:0016788 hydrolase activity, acting on ester bonds    
HAMAP MF_00614 Fen 109.411 1-255
no_ID  
Coil coil coiled-coil NA 7-28
Gene3D G3DSA:1.10.150.20 no description 3.2e-15 125-191
Gene3D G3DSA:3.40.50.1010 no description 1.8e-38 1-124
HMMPanther PTHR11081:SF9 FLAP 2.1e-128 1-290
Seg seg seg NA 233-244
279-290
superfamily SSF88723 PIN 5.4e-44 1-142
Wolf-PSORT
Lj5g3v1533400.3	nucl 9.5, cyto_nucl 7, cyto 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1533400.3