Miyakogusa Predicted Gene

Lj5g3v1533380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F6HE76_VITVI 144 89.9 94.9 (tr|F6HE76) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g00240 PE=4 SV=1
TAIR_pep AT1G65700.2 129 83.5 88.6 | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:24434463-24435870 REVERSE LENGTH=98
Medicago Medtr4g084910.1 140 90.0 95.0 | u6 snRNA-associated-like-Smprotein | HC | chr4:33145686-33149143 | 20130731
Soybean Glyma15g40590.2 142 89.9 93.7  
LJGI gnl|LJGI|AV765798 470 100.0 100.0 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1533380.1 length: 79 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 5e-17 7-73
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 8.6e-18 5-74
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 7.4e-17 7-76
no_ID  
Gene3D G3DSA:2.30.30.100 no description 1.6e-20 7-77
HMMPanther PTHR15588 LSM1 4.3e-37 5-79
Wolf-PSORT
Lj5g3v1533380.1	chlo 6, cyto 4.5, cyto_nucl 4, nucl 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1533380.1