Miyakogusa Predicted Gene

Lj5g3v1529870.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5W3D3_PRUPE 951 65.2 82.2 (tr|M5W3D3) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025182mg PE=4 SV=1
TAIR_pep AT5G48910.1 543 43.1 63.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19832969-19834909 REVERSE LENGTH=646
Medicago Medtr4g113830.1 524 39.5 57.4 | organelle transcript processing protein, putative | HC | chr4:46849211-46846995 | 20130731
Soybean Glyma05g08420.1 537 40.7 60.5  
LJGI gnl|LJGI|FS343871 1606 100.0 100.0 weakly similar to UniRef100_A7PRQ2 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1529870.1 length: 668 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.058 201-230
232-259
335-360
436-460
HMMPfam PF13041 PPR_2 1.7e-09 94-142
260-305
362-408
HMMPfam PF13812 PPR_3 0.025 502-531
HMMTigr TIGR00756 PPR: 0.00058 200-229
232-259
262-295
335-361
364-396
398-425
ProfileScan PS51375 PPR 9.306 95-129
130-164
198-232
165-195
260-294
233-259
361-395
330-360
295-329
396-426
432-462
498-532
no_ID  
HMMPanther PTHR24015 FAMILY 2.2e-273 44-668
HMMPanther PTHR24015:SF61 PGR3 2.2e-273 44-668
HMMPfam PF14432 DYW_deaminase 1.9e-16 546-658
Wolf-PSORT
Lj5g3v1529870.1	cyto 8, mito 2, nucl 1, plas 1, pero 1, cysk 1, chlo_mito 1, cyto_mito 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1529870.1