| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | Q2HW32_MEDTR | 1531 | 84.8 | 89.7 | (tr|Q2HW32) Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like OS=Medicago truncatula GN=MtrDRAFT_AC147963g18v2 PE=4 SV=1 |
| TAIR_pep | AT5G27030.1 | 1269 | 71.3 | 80.9 | | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108 |
| Medicago | Medtr1g083700.1 | 1531 | 84.8 | 89.7 | | topless-like protein | HC | chr1:37248575-37258577 | 20130731 |
| Soybean | Glyma20g38230.1 | 1504 | 83.2 | 88.3 | |
| LJGI | gnl|LJGI|TC82200 | 1733 | 98.3 | 98.3 | homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (24%) |
| Lj5g3v1511490.1 | length: 922 aa. | |||
| IPR001680 | WD40 repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0005515 | protein binding | ||
| HMMPfam | PF00400 | WD40 | 0.00029 | 406-434 509-542 548-584 |
| HMMSmart | SM00320 | WD40 | 2.8e+02 | 395-434 456-495 499-542 544-585 588-631 634-674 881-917 |
| ProfileScan | PS50082 | WD_REPEATS_2 | 9.640 | 401-443 508-542 652-683 |
| IPR006594 | LisH dimerisation motif | |||
| Molecular Function | GO:0005515 | protein binding | ||
| HMMSmart | SM00667 | Lissencephaly | 0.00069 | 76-108 |
| ProfileScan | PS50896 | LISH | 9.702 | 76-108 |
| IPR006595 | CTLH, C-terminal LisH motif | |||
| HMMSmart | SM00668 | C-terminal | 6.2e-14 | 106-164 |
| ProfileScan | PS50897 | CTLH | 13.474 | 106-164 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:2.130.10.10 | no description | 6.7e-40 | 395-716 |
| IPR017986 | WD40-repeat-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| ProfileScan | PS50294 | WD_REPEATS_REGION | 13.396 | 401-683 |
| superfamily | SSF50978 | WD40 | 0.018 | 401-718 820-922 |
| IPR019775 | WD40 repeat, conserved site | |||
| PatternScan | PS00678 | WD_REPEATS_1 | NA | 529-543 |
| no_ID | ||||
| HMMPanther | PTHR22847 | WD40 | 5e-224 | 167-922 |
| HMMPanther | PTHR22847:SF106SUBFAMILY | NOT | 5e-224 | 167-922 |
| Seg | seg | seg | NA | 25-37 313-323 327-342 743-756 |
Lj5g3v1511490.1 E.R. 4, nucl 3, cyto 3, cyto_nucl 3, E.R._vacu 3
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj5g3v1511490.1 |