Miyakogusa Predicted Gene
- Lj5g3v1499410.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SUQ3_LOTJA |
369 |
99.4 |
99.4 |
(tr|I3SUQ3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G05625.1 |
307 |
78.5 |
91.5 |
| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1632408-1633912 FORWARD LENGTH=257 |
| Medicago |
Medtr1g083600.1 |
344 |
91.5 |
95.5 |
| TPR repeat protein | HC | chr1:37194952-37197889 | 20130731 |
| Soybean |
Glyma10g29120.1 |
294 |
82.5 |
85.3 |
|
| LJGI |
gnl|LJGI|TC74916 |
1045 |
99.8 |
99.8 |
similar to UniRef100_Q2HW44 Cluster: TPR repeat; n=1; Medicago truncatula|Rep: TPR repeat - Medicago truncatula (Barrel medic), partial (83%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1499410.2 |
length: 177 aa. |
| IPR011990 |
Tetratricopeptide-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Gene3D |
G3DSA:1.25.40.10 |
no description |
7.1e-12 |
3-150 |
| IPR013026 |
Tetratricopeptide repeat-containing domain |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| ProfileScan |
PS50293 |
TPR_REGION |
12.360 |
1-60 |
| IPR013105 |
Tetratricopeptide TPR2 |
| HMMPfam |
PF07719 |
TPR_2 |
0.0081 |
29-60 |
| no_ID |
|
| HMMPanther |
PTHR23083 |
TETRATRICOPEPTIDE |
3.6e-93 |
1-163 |
| HMMPanther |
PTHR23083:SF197TPR |
DOMAIN |
3.6e-93 |
1-163 |
| superfamily |
SSF48452 |
TPR-like |
1.2e-10 |
3-143 |
- Wolf-PSORT
Lj5g3v1499410.2 chlo 8, mito 3, cyto_nucl 2, nucl 1.5, cyto 1.5, cyto_mito 1.5, mito_plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1499410.2 |
|