Miyakogusa Predicted Gene

Lj5g3v1496740.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I8P0_MEDTR 426 58.5 66.9 (tr|G7I8P0) ATP-dependent DNA helicase Q4 OS=Medicago truncatula GN=MTR_1g083250 PE=4 SV=1
TAIR_pep AT5G27680.1 353 51.9 66.8 | Symbols: RECQSIM | RECQ helicase SIM | chr5:9794244-9798637 REVERSE LENGTH=858
Medicago Medtr1g083250.3 427 58.5 66.9 | RecQ family ATP-dependent DNA helicase | HC | chr1:37050056-37045638 | 20130731
Soybean Glyma20g37970.1 407 58.3 68.3  
LJGI gnl|LJGI|FS322846 981 100.0 100.0 weakly similar to UniRef100_A7PS27 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1496740.1 length: 371 aa.
IPR004589 DNA helicase, ATP-dependent, RecQ type
method AccNumber shortName E-value location
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 8e-66 160-369
IPR009060 UBA-like
Molecular Function GO:0005515 protein binding    
superfamily SSF46934 UBA-like 6.4e-06 9-63
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1e-17 173-340
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 8.4e-25 166-371
ProfileScan PS51192 HELICASE_ATP_BIND_1 21.204 178-354
IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
ProfileScan PS50030 UBA 10.595 7-47
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.9e-30 152-348
no_ID  
Gene3D G3DSA:1.10.8.10 no description 0.001 8-46
Gene3D G3DSA:3.40.50.300 no description 3.6e-45 154-352
HMMPanther PTHR13710 DNA 7.1e-136 151-368
HMMPanther PTHR13710:SF15 DNA 7.1e-136 151-368
Seg seg seg NA 47-63
76-87
135-152
Wolf-PSORT
Lj5g3v1496740.1	cyto 6, E.R. 3, cyto_pero 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1496740.1