Miyakogusa Predicted Gene
- Lj5g3v1427770.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SZ53_MEDTR |
492 |
78.6 |
87.6 |
(tr|I3SZ53) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT3G05010.1 |
395 |
63.1 |
76.2 |
| Symbols: | Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300 |
| Medicago |
Medtr1g081910.1 |
492 |
78.6 |
87.6 |
| transmembrane protein, putative | HC | chr1:36494702-36498600 | 20130731 |
| Soybean |
Glyma20g37380.1 |
481 |
77.9 |
86.3 |
|
| LJGI |
gnl|LJGI|TC75917 |
1790 |
100.0 |
100.0 |
similar to UniRef100_A7QWZ7 Cluster: Chromosome chr14 scaffold_211, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_211, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1427770.1 |
length: 299 aa. |
| IPR018781 |
Uncharacterised protein family, transmembrane-40 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR15876 |
FAMILY |
1.9e-150 |
30-299 |
| HMMPfam |
PF10160 |
Tmemb_40 |
3.3e-98 |
29-286 |
| no_ID |
|
| HMMPanther |
PTHR15876:SF7 |
INTEGRAL |
1.9e-150 |
30-299 |
| Seg |
seg |
seg |
NA |
118-129 |
- Wolf-PSORT
Lj5g3v1427770.1 cyto 8, vacu 2, chlo 1, nucl 1, mito 1, E.R. 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1427770.1 |
|