Miyakogusa Predicted Gene

Lj5g3v1355070.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I6A4_MEDTR 877 72.1 82.0 (tr|G7I6A4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g080110 PE=4 SV=1
TAIR_pep AT3G04760.1 778 69.8 84.7 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:1303884-1305692 REVERSE LENGTH=602
Medicago Medtr1g080110.1 877 72.1 82.0 | pentatricopeptide (PPR) repeat protein | HC | chr1:35577637-35579719 | 20130731
Soybean Glyma20g36540.1 801 70.2 81.3  
LJGI gnl|LJGI|TC60053 1045 99.8 99.8 similar to UniRef100_A7QMW3 Cluster: Chromosome chr14 scaffold_128, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_128, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1355070.1 length: 596 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 5.6e-11 219-250
253-281
358-390
HMMPfam PF13041 PPR_2 1e-14 152-201
292-341
397-444
467-516
HMMPfam PF13812 PPR_3 0.4 122-150
HMMTigr TIGR00756 PPR: 1.2e-06 96-120
156-189
190-224
225-258
260-294
295-329
330-364
365-399
400-434
470-503
505-539
ProfileScan PS51375 PPR 6.007 84-118
153-187
119-149
188-222
223-257
258-292
293-327
328-362
363-397
398-432
433-467
468-502
503-537
538-572
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5e-08 365-492
no_ID  
HMMPanther PTHR24015 FAMILY 8.2e-153 90-568
HMMPanther PTHR24015:SF0 SUBFAMILY 8.2e-153 90-568
Seg seg seg NA 47-62
superfamily SSF48452 TPR-like 0.0026 398-492
Wolf-PSORT
Lj5g3v1355070.1	chlo 10.5, chlo_mito 6.83333, mito 2, cyto_mito 1.83333
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1355070.1