Miyakogusa Predicted Gene

Lj5g3v1303350.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I5N5_MEDTR 1867 93.5 96.7 (tr|G7I5N5) O-linked GlcNAc transferase like protein OS=Medicago truncatula GN=MTR_1g079510 PE=4 SV=1
TAIR_pep AT3G04240.1 1637 81.7 91.1 | Symbols: SEC | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1114187-1120722 REVERSE LENGTH=977
Medicago Medtr1g079510.1 1867 93.5 96.7 | peptide-N-acetylglucosaminyltransferase | HC | chr1:35335193-35323629 | 20130731
Soybean Glyma20g36330.1 1856 92.9 96.0  
LJGI gnl|LJGI|TC77696 1235 98.5 98.5 similar to UniRef100_A7PZ50 Cluster: Chromosome chr4 scaffold_39, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_39, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1303350.2 length: 949 aa.
IPR011990 Tetratricopeptide-like helical
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.7e-63 63-164
165-231
232-292
293-521
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 105.466 61-502
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 9.9e-05 198-229
299-331
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF13176 TPR_7 0.0029 471-503
HMMSmart SM00028 Tetratricopeptide 0.0018 95-128
129-162
163-196
197-230
231-264
265-298
299-332
333-366
367-400
401-434
435-468
469-502
ProfileScan PS50005 TPR 9.116 61-94
95-128
129-162
163-196
197-230
231-264
265-298
299-332
333-366
367-400
401-434
435-468
469-502
no_ID  
HMMPanther PTHR23083 TETRATRICOPEPTIDE 0 67-823
HMMPanther PTHR23083:SF21 UDP-N-ACETYLGLUCOSAMINE--PEPTIDE 0 67-823
HMMPfam PF13414 TPR_11 4.8e-11 129-194
231-296
334-392
404-466
HMMPfam PF13844 Glyco_transf_41 1.3e-66 600-753
766-947
Seg seg seg NA 8-16
superfamily SSF48452 TPR-like 1.6e-49 352-851
60-311
Wolf-PSORT
Lj5g3v1303350.2	nucl 5, extr 3, pero 3, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1303350.2