Miyakogusa Predicted Gene

Lj5g3v1275080.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q40200_LOTJA 461 99.6 100.0 (tr|Q40200) RAB11J OS=Lotus japonicus GN=rab11J PE=2 SV=1
TAIR_pep AT5G47520.1 391 85.8 90.7 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277596-19278366 REVERSE LENGTH=221
Medicago Medtr1g078200.1 407 88.8 93.7 | RAB GTPase-like protein C2B | HC | chr1:34998790-34993821 | 20130731
Soybean Glyma20g36100.1 422 91.2 95.6  
LJGI gnl|LJGI|TC64554 1324 99.9 99.9 UniRef100_Q40200 Cluster: RAB11J; n=1; Lotus japonicus|Rep: RAB11J - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1275080.1 length: 223 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2.2e-40 15-36
38-54
56-78
118-131
153-175
HMMPfam PF00071 Ras 7.2e-61 16-176
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 3.6e-05 20-216
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 1.3e-11 17-178
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 6.5e-104 15-178
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.2e-37 13-172
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 2.1e-26 12-178
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.1e-63 10-175
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.1e-70 7-221
HMMPanther PTHR24073 FAMILY 4.1e-108 6-222
HMMPanther PTHR24073:SF87 SUBFAMILY 4.1e-108 6-222
ProfileScan PS51419 RAB 34.530 10-221
Wolf-PSORT
Lj5g3v1275080.1	nucl 4, cyto 4, cyto_nucl 4, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1275080.1 Not targeted -20.227 0 -2.564 13.26% -17.664